After completing his mission to teach soccer to kids, Tenma Matsukaze returns to Raimon Junior High School to find that the school's soccer club has disappeared along with the memories of its members, who also don't recall participating in the Holy Road Soccer Tournament. The members, including the champion team, have lost their passion for soccer and their recollections of Tenma. Alpha, the leader of the Route Agents and captain of Protocol Omega, reveals that they're behind this, aiming to eliminate soccer from Raimon, and Tenma is next on their list. A mysterious boy named Fei Rune intervenes to save Tenma, setting the stage for a confrontation to determine the fate of soccer in Raimon.